:orphan:

ProcScripts Example Gallery
===========================

Below is a gallery of examples using our 
various functions.



.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loads in a previously saved HDF5 dataset. If the attribute &#x27;concentration&#x27; does not exist in th...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_append_conc_to_h5file_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_append_conc_to_h5file.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Edit the concentration parameter of a saved HDF5 file</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Processes a square wave reflection in order to calculate the  Q of a NMR probe. Optional to sho...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_proc_square_refl_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_square_refl.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Process a square wave reflection</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Demonstrate how we can automatically find the zeroth order phase and the center of the echo and...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_FIDtoEcho_Actual_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_FIDtoEcho_Actual.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">FID from Echo after Phasing and Timing Correction</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="A demo of the correlation alignment on a dataset with a lot of phase cycling noise">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_phaseCycNoise_example_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_phaseCycNoise_example.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Phase Cycling Noise</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="However, this EPR alignment represents a more challenging case b/c:">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_epr_overlay2_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_epr_overlay2.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Another EPR Alignment</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Generate a PSD from Oscilloscope Data">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_generate_oscilloscope_PSD_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_generate_oscilloscope_PSD.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Generate a PSD from Oscilloscope Data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Here, we sit and acquire the same sample with different acquisition parameters, and make sure w...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_QESR_samesample_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_QESR_samesample.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">QESR of same sample</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="An ESR spectra should be collected for both the  sample of interest as well as a &quot;background&quot;  ...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_QESR_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_QESR.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Quantify the Double Integral of an ESR spectra (QESR)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Important note: In order to run this script, you need to set the default calibration values in ...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_epr_overlay_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_epr_overlay.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">EPR correlation alignment</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Here we load in low SNR Hahn echo data and demonstrate that we can find reasonable and accurate...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_integrate_limits_realData_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_integrate_limits_realData.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Demonstrate Integrate Limits on Experimental Data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Generate a PSD from SpinCore Data">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_generate_SC_PSD_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_generate_SC_PSD.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Generate a PSD from SpinCore Data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Based on proc_raw.py: Here we apply the postprocessing, and then do some stuff specific to a CP...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_CPMG_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_CPMG.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">CPMG-specific processing</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Process Enhancement experiment">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_Ep_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_Ep.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Process Enhancement experiment</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Take real data with varying echo times,  and demonstrate how we can automatically find the zero...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_FIDtoEcho_Actual_Challenging_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_FIDtoEcho_Actual_Challenging.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">FID from Echo after Phasing and Timing Correction -- Challenging Actual Data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="py proc_nutation.py NODENAME FILENAME EXP_TYPE">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_nutation_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_nutation.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Process nutation data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="For this demonstration, we generate inversion recovery data for a single peak, with a relativel...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_integrate_limits_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_integrate_limits.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Demonstrate Integrate Limits</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="py proc_FID_nutation.py NODENAME FILENAME EXP_TYPE">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_FID_nutation_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_FID_nutation.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Process FID nutation data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Read Instrument Log">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_read_log_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_read_log.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Read Instrument Log</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Take fake data with a relatively symmetric echo  (T_2^*=1/50\pi, echo time of 10 ms), and demon...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_Hermitian_Phasing_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_Hermitian_Phasing.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Phasing and Timing Correction With Fake Data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Check NMR/ESR resonance ratio using a field sweep">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_fieldSweep_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_fieldSweep.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Check NMR/ESR resonance ratio using a field sweep</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Processes and visualizes the nutation pulse program that has been  captured on a oscilloscope. ...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_capture_nutation_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_capture_nutation.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Captured Nutation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Takes the npz file of the captured tuning curve at different zoom levels and plots them on the ...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_tune_capture_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_tune_capture.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Processing the Captured Tuning Curve</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Fourier transforms (and any needed data corrections for older data) are performed according to ...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_raw_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_raw.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Show data with postproc</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Two files are required for the following example:">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_gain_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_gain.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">"</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Process FIR experiment">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_FIR_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_FIR.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Process FIR experiment</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Assuming a single pulse was acquired via simple_onepulse_capture.py  in the FLInst repo using t...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_GDS_capture_int_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_GDS_capture_int.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Calculating β from individual pulse capture</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Generate a fake dataset of an inversion recovery with multiple repeats (φ × t2 × vd × repeats) ...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_check_integration_error_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_check_integration_error.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Check integral error calculation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Here, we want to calculate the time-domain variance to use in error propagation. But, to make s...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_time_domain_noise_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_time_domain_noise.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Time-Domain Noise</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Makes sure that automatically chosen integral bounds perform similar to or better than what you...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_integration_with_error_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_integration_with_error.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Check Integration</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This data should be acquired using example/run_pulse_calibration.py in FLInst.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_verify_tsqrtP_calibration_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_verify_tsqrtP_calibration.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Verify the pulse calibration</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="compare CPMG echo">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_compare_CPMG_echo_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_compare_CPMG_echo.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">compare CPMG echo</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Two files are required for the following example:">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_proc_rec_response_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_proc_rec_response.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Calculate and Fit Receiver Response to Sinc</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Calculate actual beta as a function of pulse length">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_calibrate_tsqrtP_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_calibrate_tsqrtP.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Calculate actual beta as a function of pulse length</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/append_conc_to_h5file
   /auto_examples/proc_square_refl
   /auto_examples/FIDtoEcho_Actual
   /auto_examples/phaseCycNoise_example
   /auto_examples/epr_overlay2
   /auto_examples/generate_oscilloscope_PSD
   /auto_examples/QESR_samesample
   /auto_examples/QESR
   /auto_examples/epr_overlay
   /auto_examples/integrate_limits_realData
   /auto_examples/generate_SC_PSD
   /auto_examples/proc_CPMG
   /auto_examples/proc_Ep
   /auto_examples/FIDtoEcho_Actual_Challenging
   /auto_examples/proc_nutation
   /auto_examples/integrate_limits
   /auto_examples/proc_FID_nutation
   /auto_examples/read_log
   /auto_examples/Hermitian_Phasing
   /auto_examples/proc_fieldSweep
   /auto_examples/proc_capture_nutation
   /auto_examples/proc_tune_capture
   /auto_examples/proc_raw
   /auto_examples/proc_gain
   /auto_examples/proc_FIR
   /auto_examples/proc_GDS_capture_int
   /auto_examples/check_integration_error
   /auto_examples/time_domain_noise
   /auto_examples/integration_with_error
   /auto_examples/verify_tsqrtP_calibration
   /auto_examples/compare_CPMG_echo
   /auto_examples/proc_rec_response
   /auto_examples/calibrate_tsqrtP


.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_